API Reference

Core Modules

gene.query	Provides methods for handling queries.
gene.schemas	Contains data models for representing VICC normalized gene records.

Database Modules

gene.database.database	Provide abstract Database class and relevant tools for database initialization.
gene.database.dynamodb	Provide DynamoDB client.
gene.database.postgresql	Provide PostgreSQL client.

ETL Modules

gene.etl.base	A base class for extraction, transformation, and loading of data.
gene.etl.ensembl	Defines the Ensembl ETL methods.
gene.etl.hgnc	Defines the HGNC ETL methods.
gene.etl.ncbi	Defines ETL methods for the NCBI data source.
gene.etl.update	Provide functions for updating normalizer data
gene.etl.exceptions	Provide ETL-specific exceptions.
gene.etl.merge	Create concept groups and merged records.